Difference between revisions of "NM task-centric program program list"

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List of Numerical Methods programs in Madagascar
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List of '''Numerical Methods''' programs in Madagascar. An overview of all task-centric pages can be found in the main [[Task-centric program list]].
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'''All program names below should be prefixed with "sf".'''
  
 
== Operation on file content ==
 
== Operation on file content ==
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==Single-file==
 
==Single-file==
 
* Display dataset attributes: [http://reproducibility.org/RSF/sfattr.html attr]
 
* Display dataset attributes: [http://reproducibility.org/RSF/sfattr.html attr]
* Compute a histogram of data values: [http://reproducibility.org/RSF/sfhistogram.html histogram]
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* 1-D histogram: [http://reproducibility.org/RSF/sfhistogram.html histogram]
 
* Computes what clip value corresponds to a given pclip: [http://reproducibility.org/RSF/sfquantile.html quantile]
 
* Computes what clip value corresponds to a given pclip: [http://reproducibility.org/RSF/sfquantile.html quantile]
 
* Clip the data: [http://reproducibility.org/RSF/sfclip.html clip]
 
* Clip the data: [http://reproducibility.org/RSF/sfclip.html clip]
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* Element by element minimum or maximum of two RSF files: [http://reproducibility.org/RSF/sfminmax.html minmax]
 
* Element by element minimum or maximum of two RSF files: [http://reproducibility.org/RSF/sfminmax.html minmax]
 
* Similarity measure between two datasets: [http://reproducibility.org/RSF/sfsimilarity.html similarity]
 
* Similarity measure between two datasets: [http://reproducibility.org/RSF/sfsimilarity.html similarity]
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* 2-D histogram (inputs from 2 files): [http://reproducibility.org/RSF/sfhist2.html hist2]
  
 
= Mathematics algorithms =
 
= Mathematics algorithms =
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* Causal integration on the first axis: [http://reproducibility.org/RSF/sfcausint.html causint]
 
* Causal integration on the first axis: [http://reproducibility.org/RSF/sfcausint.html causint]
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* Derivative along the first axis: [http://reproducibility.org/RSF/sfigrad.html igrad]
 
* Fast Fourier Transform along the first axis (from real to complex): [http://reproducibility.org/RSF/sffft1.html fft1]
 
* Fast Fourier Transform along the first axis (from real to complex): [http://reproducibility.org/RSF/sffft1.html fft1]
 
* FFT transform on extra axis (from complex to complex): [http://reproducibility.org/RSF/sffft1.html fft3]
 
* FFT transform on extra axis (from complex to complex): [http://reproducibility.org/RSF/sffft1.html fft3]
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== Interpolation ==
 
== Interpolation ==
* 1-D ENO (Essentiallly Non Oscillatory) interpolation: [http://reproducibility.org/RSF/sfemap1.html remap1]
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* 1-D ENO (Essentiallly Non Oscillatory) interpolation: [http://reproducibility.org/RSF/sfremap1.html remap1]
 
* 1-D sinc interpolation: [http://reproducibility.org/RSF/sfsinc.html sinc]
 
* 1-D sinc interpolation: [http://reproducibility.org/RSF/sfsinc.html sinc]

Latest revision as of 08:28, 6 August 2011

List of Numerical Methods programs in Madagascar. An overview of all task-centric pages can be found in the main Task-centric program list.

All program names below should be prefixed with "sf".

Operation on file content

  • Generate simple data (spikes, boxes, planes, constants): spike
  • Mathematical operations on data files: math
  • Add, multiply, or divide RSF datasets: add
  • Add, multiply, or divide RSF datasets (fast, OMP-enabled): paradd
  • Create a mask: mask
  • Scale data: scale
  • Rotate a portion of one or more axes in the data hypercube: rotate
  • Zero a portion of the dataset: cut
  • Extend a dataset by duplicating in the specified axis dimension: spray

Complex number operations

  • Convert real data to complex (by adding zero imaginary part): rtoc
  • Extract real part of a complex dataset: real
  • Extract imaginary part of a complex dataset: imag
  • Create a complex dataset from its real and imaginary parts: cmplx

Statistical operations on files

Single-file

  • Display dataset attributes: attr
  • 1-D histogram: histogram
  • Computes what clip value corresponds to a given pclip: quantile
  • Clip the data: clip
  • One- or two-sided data clipping: clip2
  • Percentile clip: pclip
  • Threshold float/complex inputs given a constant/varying threshold level: thr
  • Soft thresholding: threshold
  • Construct incremental minimum or maximum lists from an RSF file: listminmax
  • Sort a float/complex vector by absolute values: sort

Multi-file

  • Element by element minimum or maximum of two RSF files: minmax
  • Similarity measure between two datasets: similarity
  • 2-D histogram (inputs from 2 files): hist2

Mathematics algorithms

Basic mathematical processes

  • Causal integration on the first axis: causint
  • Derivative along the first axis: igrad
  • Fast Fourier Transform along the first axis (from real to complex): fft1
  • FFT transform on extra axis (from complex to complex): fft3
  • 3D FFT with centering and Hermitian scaling: fft3d
  • Frequency spectra: spectra
  • Frequency spectra in 2-D: spectra2
  • 1-D Digital Wavelet Transform: dwt
  • Multi-dimensional cosine transform: cosft

Linear Algebra

  • Simple matrix multiplication: matmult
  • Simple matrix multiplication for complex matrices: cmatmult
  • Find eigenvalues and eigenvectors of a symmetric positive definite matrix: dmeig
  • Kroneker product with square matrices: kron
  • Generic conjugate-gradient solver for linear inversion: conjgrad
  • Generic dot-product test for linear operators with adjoints: dottest
  • Generic conjugate-gradient solver for linear inversion with complex data: cconjgrad
  • Generic dot-product test for complex linear operators with adjoints: cdottest
  • Stack a dataset over one of the dimensions: stack
  • Transpose two axes in a dataset: transp

Interpolation

  • 1-D ENO (Essentiallly Non Oscillatory) interpolation: remap1
  • 1-D sinc interpolation: sinc