Difference between revisions of "Qingdao 2015"

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[[Image:Qingdao.jpg|center|frame]]
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[[Image:Qingdao2015.jpg|center|frame|800px]]
  
<center><big>'''Madagascar School for Advanced Users in Qingdao 2015'''</big></center>
+
<center><big>'''2015 Madagascar School for Advanced Users in Qingdao'''</big></center>
  
 
&nbsp;
 
&nbsp;
 +
 +
== Introduction ==
 +
 +
Madagascar provides a complete environment for organizing one's research, from new software development to running computational experiments to publishing the experimental results in papers and reports, archiving them for future usage, and sharing them with colleagues and sponsors. Madagascar school has been organized many times around the word. It provides a platform for Madagascar users to learn and communicate with the developers. This Madagascar school will introduce the advanced usages for the users with fundamental knowledge of Madagascar. Besides the lecture section, this school will also features a discussion section, in which the participants are welcome to share the research experiences using Madagascar. This Madagascar school is convened by Prof. Sergey Fomel from the University of Texas at Austion and hosted by Prof. Qizhen Du from China University of Petroleum.
  
 
== Dates ==
 
== Dates ==
Line 10: Line 14:
  
 
== Agenda ==
 
== Agenda ==
 +
 +
{| align="center" border="1" cellpadding="5" cellspacing="0"
 +
! colspan="3" style="background:#ffdead;" | Before the school: Friday, August 7, 2015
 +
|-
 +
| 12:00-4:00
 +
! colspan="2"  | Bring your laptop and get individual help with Madagascar
 +
|-
 +
|
 +
! colspan="2"  | Gang Fang, Yang Liu, Zhiguang Xue
 +
|-
 +
|}
 +
 +
&nbsp;
 +
 +
 +
{| align="center" border="1" cellpadding="5" cellspacing="0"
 +
! colspan="3" style="background:#ffdead;" | Day 1: Saturday, August 8, 2015
 +
|-
 +
| 8:00-8:20   
 +
! colspan="2"  | Welcome (Qizhen Du)
 +
|-
 +
|
 +
| colspan="2"  |
 +
 +
|-
 +
| 8:20-10:00
 +
! colspan="2"  | Writing and publishing a reproducible paper using LaTeX and Madagascar (Yang Liu)
 +
|-
 +
|
 +
| colspan="2"  |
 +
[http://www.ahay.org/wikilocal/docs/M8r2015-Qingdao-Yang.pdf Slides] (1.8M)<br><br>
 +
[https://github.com/ahay/src/tree/master/book/rsf/school2009 Example paper]
 +
|-
 +
| 10:00-10:30
 +
! colspan="2" style="background:#efefef;" | break
 +
|-
 +
| 10:30-12:00
 +
! colspan="2"  | Madagascar principles (Sergey Fomel)
 +
|-
 +
|
 +
| colspan="2"  |
 +
[http://www.ahay.org/wikilocal/docs/Fomel-Qingdao.pdf Slides] (6.6M)<br><br>
 +
[https://github.com/sfomel/ipython/blob/master/Qingdao.ipynb Jupyter notebook]
 +
|-
 +
| 12:00-1:00
 +
! colspan="2" style="background:#efefef;" | Lunch
 +
|-
 +
| 1:00-3:00
 +
! colspan="2"  |  Madagascar development: writing programs in C, C++, and Fortran (Zhiguang Xue)
 +
|-
 +
|
 +
| colspan="2"  |
 +
[http://www.ahay.org/wikilocal/docs/Madagascar_API_Zhiguang.pdf Slides] (500K)<br><br>
 +
[http://www.ahay.org/RSF/book/rsf/school2015/born.html Exercise]<br><br>
 +
[https://github.com/ahay/src/tree/master/book/rsf/school2015/born Exercise code]
 +
|-
 +
| 3:00-3:30
 +
! colspan="2" style="background:#efefef;" | break
 +
|-
 +
| 3:30-4:30
 +
! colspan="2"  | Matlab interface (Gang Fang)
 +
|-
 +
|
 +
| colspan="2"  |
 +
[http://www.ahay.org/wikilocal/docs/Matlab_interface.pdf Slides] (4.3M)<br><br>
 +
[http://www.ahay.org/RSF/book/rsf/school2015/matlab.html Exercise]<br><br>
 +
[https://github.com/ahay/src/tree/master/book/rsf/school2015/matlab Exercise code]
 +
|-
 +
|-
 +
| 4:30-5:00
 +
! colspan="2"  | Contributing to Madagascar (Gang Fang and Sergey Fomel)
 +
|-
 +
|
 +
| colspan="2"  |
 +
[http://www.ahay.org/wikilocal/docs/Contributing_to_Madagascar.pdf Slides] (3.7M)<br><br>
 +
[http://www.ahay.org/wikilocal/docs/Contributing-Qingdao.pdf Slides] (3.6M)
 +
|-
 +
|}
 +
 +
&nbsp;
 +
 +
{| align="center" border="1" cellpadding="5" cellspacing="0"
 +
! colspan="3" style="background:#ffdead;" | Day 2: Sunday, August 9, 2015
 +
|-
 +
| 8:00-12:00
 +
! colspan="2"  | Open discussion
 +
|-
 +
|
 +
| colspan="2"  |
 +
Bo Wang, Ning Liu, Changle Chen (Jilin University)<br>
 +
[http://www.ahay.org/wikilocal/docs/1_How_does_Madagascar_works_in_our_scientific_reseach_Bo_Wang.pdf  How does Madagascar work in our scientific research]
 +
|-
 +
|
 +
| colspan="2"  |
 +
Dong Han (China University of Petroleum - East China)<br>
 +
[http://www.ahay.org/wikilocal/docs/2_DongHan-Madagascar-Tsingtao-2015.pdf My travel along with Madagascar]
 +
|-
 +
|
 +
| colspan="2"  |
 +
Tengfei Wang, Peng Zou (Tongji University)<br>
 +
[http://www.ahay.org/wikilocal/docs/3_Madagascarschool-Qingdao-Wang.pdf Some experiences in working with Madagascar: Installation & development]
 +
|-
 +
|
 +
| colspan="2"  |
 +
Hanming Chen (China University of Petroleum - Beijing)<br>
 +
[http://www.ahay.org/wikilocal/docs/4_Experience-Madagascar-HanmingChen.pdf Application of lowrank decomposition for seismic wave modeling]
 +
|-
 +
|
 +
| colspan="2"  |
 +
Heng Luo, Long Teng, Yong Liu, Kai Xu (Sinopec Geophysical Research Institute)<br>
 +
[http://www.ahay.org/wikilocal/docs/5_Madagascar_School_Discussion_Heng_Luo.pdf What makes Madagascar different]
 +
|-
 +
|}
  
 
== Location ==
 
== Location ==
  
Room 751, Engineering Building C, China University of Petroleum (East China)  
+
Room 751 in Engineering Building C, China University of Petroleum (East China), Qingdao, China
  
中国石油大学(华东),[http://j.map.baidu.com/cmp51 工科楼C座 751会议室] ,山东省青岛市经济技术开发区66号
+
中国石油大学(华东),[http://j.map.baidu.com/cmp51 工科楼C座751会议室] ,山东省青岛市黄岛区长江西路66号
  
 
== Registration ==
 
== Registration ==
 +
The Madagascar School participation is free but requires an application.Please send your name and affiliation to [mailto:rsfschool@gmail.com rsfschool@gmail.com].
 +
The deadline is July 31, 2015.
  
 +
== Pre-workshop Assignment ==
  
== Pre-workshop Assignment ==
+
You must [[download]] and [[Installation|install]] the Madagascar package ([http://sourceforge.net/projects/rsf/files/latest/download?source=files stable version 1.7]) in the days before the school. If issues come up, there will an opportunity to get installation help on Friday, August 7.  Remember to bring your laptop (Linux, Mac, or Windows) to the session!
 +
 
 +
=== Additional Installation Requirements ===
 +
 
 +
To install IPython and Jupyter notebook support:
 +
 
 +
# Install conda:
 +
#: <pre>bash Miniconda-latest-[your architecture].sh</pre>
 +
#: where [your architecture] is one of
 +
#* Linux-x86
 +
#* Linux-x86_64
 +
#* MacOSX-x86_64
 +
# Close and reopen the terminal window.
 +
# Run
 +
#: <pre>conda install ipython ipython-notebook</pre>
 +
# Run
 +
#: <pre>ipython notebook</pre>
 +
 
 +
The web instructions are at:
 +
* http://conda.pydata.org/miniconda.html
 +
* http://ipython.org/install.html
 +
 
 +
=== QQ group ===
 +
 
 +
Madagascar advanced school QQ group: 468749704
 +
 
 +
== Organizations ==
 +
 
 +
The "Madagascar School for Advanced Users in Qingdao 2015" is organized by
 +
 
 +
* '''Qizhen Du'''    from School of Geosciences, China University of Petroleum (East China) (Qingdao, China)
 +
 
 +
* '''Sergey Fomel''' from Jackson School of Geosciences, The University of Texas at Austin (Austin, USA)
 +
 
 +
* '''Gang Fang'''    from Qingdao Institute of Marine Geology, China Geological Survey (Qingdao, China)
 +
 
 +
* '''Yang Liu'''    from College of Geo-exploration Science and Technology, Jilin University (Changchun, China)
  
You must [[download]] and [[Installation|install]] the Madagascar package ([http://sourceforge.net/projects/rsf/files/latest/download?source=files stable version 1.7]) in the days before the workshop according to the instructions on the left margin of this webpage.  If issues come up, there will an opportunity to install the package at the start of the workshop.  Remember to bring your laptop (Linux, Mac, or Windows) to the session!
+
and hosted by '''Qizhen Du'''
  
 
== Instructors ==
 
== Instructors ==
  
* '''Gang Fang'''
+
* '''Gang Fang''' is an assistant research fellow at Qingdao Institute of Marine Geology, China Geological Survey. He received a Ph.D in Geophysics from China University of Petroleum (East China) in 2014 and was a visiting Ph.D student at Bureau of Economic Geology, The University of Texas at Austin from 2012 to 2013 sponsored by China State Scholarship Fund. His research interests are seismic modeling and seismic imaging. https://www.linkedin.com/profile/view?id=92186291
 
* '''Sergey Fomel''' is a Professor at the Jackson School of Geosciences, the University of Texas at Austin. He received a Ph.D. in Geophysics from Stanford University in 2001. Sergey started work on Madagascar (at that time named RSF for Regularly Sampled Format) in 2003. http://www.jsg.utexas.edu/researcher/sergey_fomel/
 
* '''Sergey Fomel''' is a Professor at the Jackson School of Geosciences, the University of Texas at Austin. He received a Ph.D. in Geophysics from Stanford University in 2001. Sergey started work on Madagascar (at that time named RSF for Regularly Sampled Format) in 2003. http://www.jsg.utexas.edu/researcher/sergey_fomel/
 
* '''Yang Liu''' is a Professor of Geophysics at College of Geo-exploration science and technology at Jilin University, China. He received a Ph.D. in Geophysics from Jilin University in 2006 and was a Postdoctoral fellow at Bureau of Economic Geology, The University of Texas at Austin from 2007 to 2010. His research focuses mainly on seismic data processing. http://gest.jlu.edu.cn/?mod=info&act=view&id=54
 
* '''Yang Liu''' is a Professor of Geophysics at College of Geo-exploration science and technology at Jilin University, China. He received a Ph.D. in Geophysics from Jilin University in 2006 and was a Postdoctoral fellow at Bureau of Economic Geology, The University of Texas at Austin from 2007 to 2010. His research focuses mainly on seismic data processing. http://gest.jlu.edu.cn/?mod=info&act=view&id=54
 
* '''Zhiguang Xue''' is a second-year Ph.D. student working with Prof. Sergey Fomel at the Jackson School of Geosciences, the University of Texas at Austin. He graduated from China University of Petroleum (EastChina) with a Bachelor's Degree in Geophysics in 2012. His research interests are seismic imaging and tomography. https://www.linkedin.com/in/zhiguangxue
 
* '''Zhiguang Xue''' is a second-year Ph.D. student working with Prof. Sergey Fomel at the Jackson School of Geosciences, the University of Texas at Austin. He graduated from China University of Petroleum (EastChina) with a Bachelor's Degree in Geophysics in 2012. His research interests are seismic imaging and tomography. https://www.linkedin.com/in/zhiguangxue

Latest revision as of 08:58, 21 August 2015

Qingdao2015.jpg
2015 Madagascar School for Advanced Users in Qingdao

 

Introduction

Madagascar provides a complete environment for organizing one's research, from new software development to running computational experiments to publishing the experimental results in papers and reports, archiving them for future usage, and sharing them with colleagues and sponsors. Madagascar school has been organized many times around the word. It provides a platform for Madagascar users to learn and communicate with the developers. This Madagascar school will introduce the advanced usages for the users with fundamental knowledge of Madagascar. Besides the lecture section, this school will also features a discussion section, in which the participants are welcome to share the research experiences using Madagascar. This Madagascar school is convened by Prof. Sergey Fomel from the University of Texas at Austion and hosted by Prof. Qizhen Du from China University of Petroleum.

Dates

August 8-9, 2015.

Agenda

Before the school: Friday, August 7, 2015
12:00-4:00 Bring your laptop and get individual help with Madagascar
Gang Fang, Yang Liu, Zhiguang Xue

 


Day 1: Saturday, August 8, 2015
8:00-8:20 Welcome (Qizhen Du)
8:20-10:00 Writing and publishing a reproducible paper using LaTeX and Madagascar (Yang Liu)

Slides (1.8M)

Example paper

10:00-10:30 break
10:30-12:00 Madagascar principles (Sergey Fomel)

Slides (6.6M)

Jupyter notebook

12:00-1:00 Lunch
1:00-3:00 Madagascar development: writing programs in C, C++, and Fortran (Zhiguang Xue)

Slides (500K)

Exercise

Exercise code

3:00-3:30 break
3:30-4:30 Matlab interface (Gang Fang)

Slides (4.3M)

Exercise

Exercise code

4:30-5:00 Contributing to Madagascar (Gang Fang and Sergey Fomel)

Slides (3.7M)

Slides (3.6M)

 

Day 2: Sunday, August 9, 2015
8:00-12:00 Open discussion

Bo Wang, Ning Liu, Changle Chen (Jilin University)
How does Madagascar work in our scientific research

Dong Han (China University of Petroleum - East China)
My travel along with Madagascar

Tengfei Wang, Peng Zou (Tongji University)
Some experiences in working with Madagascar: Installation & development

Hanming Chen (China University of Petroleum - Beijing)
Application of lowrank decomposition for seismic wave modeling

Heng Luo, Long Teng, Yong Liu, Kai Xu (Sinopec Geophysical Research Institute)
What makes Madagascar different

Location

Room 751 in Engineering Building C, China University of Petroleum (East China), Qingdao, China

中国石油大学(华东),工科楼C座751会议室 ,山东省青岛市黄岛区长江西路66号

Registration

The Madagascar School participation is free but requires an application.Please send your name and affiliation to rsfschool@gmail.com. The deadline is July 31, 2015.

Pre-workshop Assignment

You must download and install the Madagascar package (stable version 1.7) in the days before the school. If issues come up, there will an opportunity to get installation help on Friday, August 7. Remember to bring your laptop (Linux, Mac, or Windows) to the session!

Additional Installation Requirements

To install IPython and Jupyter notebook support:

  1. Install conda:
    bash Miniconda-latest-[your architecture].sh
    where [your architecture] is one of
    • Linux-x86
    • Linux-x86_64
    • MacOSX-x86_64
  2. Close and reopen the terminal window.
  3. Run
    conda install ipython ipython-notebook
  4. Run
    ipython notebook

The web instructions are at:

QQ group

Madagascar advanced school QQ group: 468749704

Organizations

The "Madagascar School for Advanced Users in Qingdao 2015" is organized by

  • Qizhen Du from School of Geosciences, China University of Petroleum (East China) (Qingdao, China)
  • Sergey Fomel from Jackson School of Geosciences, The University of Texas at Austin (Austin, USA)
  • Gang Fang from Qingdao Institute of Marine Geology, China Geological Survey (Qingdao, China)
  • Yang Liu from College of Geo-exploration Science and Technology, Jilin University (Changchun, China)

and hosted by Qizhen Du

Instructors

  • Gang Fang is an assistant research fellow at Qingdao Institute of Marine Geology, China Geological Survey. He received a Ph.D in Geophysics from China University of Petroleum (East China) in 2014 and was a visiting Ph.D student at Bureau of Economic Geology, The University of Texas at Austin from 2012 to 2013 sponsored by China State Scholarship Fund. His research interests are seismic modeling and seismic imaging. https://www.linkedin.com/profile/view?id=92186291
  • Sergey Fomel is a Professor at the Jackson School of Geosciences, the University of Texas at Austin. He received a Ph.D. in Geophysics from Stanford University in 2001. Sergey started work on Madagascar (at that time named RSF for Regularly Sampled Format) in 2003. http://www.jsg.utexas.edu/researcher/sergey_fomel/
  • Yang Liu is a Professor of Geophysics at College of Geo-exploration science and technology at Jilin University, China. He received a Ph.D. in Geophysics from Jilin University in 2006 and was a Postdoctoral fellow at Bureau of Economic Geology, The University of Texas at Austin from 2007 to 2010. His research focuses mainly on seismic data processing. http://gest.jlu.edu.cn/?mod=info&act=view&id=54
  • Zhiguang Xue is a second-year Ph.D. student working with Prof. Sergey Fomel at the Jackson School of Geosciences, the University of Texas at Austin. He graduated from China University of Petroleum (EastChina) with a Bachelor's Degree in Geophysics in 2012. His research interests are seismic imaging and tomography. https://www.linkedin.com/in/zhiguangxue